Suppression-subtractive hybridization: A rapid and inexpensive detection methodology for up regulated Perkinsus olseni genes

Abstract

A cDNA forward subtraction library was constructed from the mollusc parasite Perkinsus olseni exposed to 
hemolymph from its natural host, the clam Ruditapes decussatus, and two different methodologies were used to 
unravel different non-redundant contigs. Our results demonstrated that screening of the non-enriched direct cDNA 
subtractive library (Dfsl) was the most efficient and least time- consuming method. It facilitated the identification of 
genes belonging to 25 different classes of molecular functions out of the 96 clones analyzed. In contrast, only 6 
different classes from 204 sequenced clones were identified from the enriched library (efMOSl). It was concluded that 
the Dfsl cDNA subtractive library resulted in a larger pool of diversified gene hits that were obtained in a shorter time 
and with less technically- demanding methodology when compared to the efMOSl approach, thus demonstrating its 
significance and usefulness when time and/or resources are limited.